NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210402_10162093

Scaffold Ga0210402_10162093


Overview

Basic Information
Taxon OID3300021478 Open in IMG/M
Scaffold IDGa0210402_10162093 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2041
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010638Metagenome / Metatranscriptome301Y
F021633Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0210402_101620931F021633AGGAMTRTIAFLLVLGLTATAGSGQAPANAPLKIFLNEVQPGVMSAPQYCTLVFADHRFHSEKADIKHGRDTNRKMYEGQLSDSDWNTLVAVIDSPGFRDLKVPQTVPPLVMQDTHPYTISVARDHNFQNMEFLDNKSLKPYESQVKPLLQWWKSFRGQRTPESGAPADARC
Ga0210402_101620932F010638GGAGGMVVRFRFDKILALLPLLGTLSFAHTAAGQETTPLLRLQRSKAYLNLETNVVHAQGMNGITYGKGGDVSSYPNSLSCLTVHSDGKYVFEKRDEQTVGKPKVKAAEGTLGADDLQHLKAILDDENLKKLATPKPPDIPNNATIREIESVDAQIDHAGTQQRLTTIKERLKMGASEFGGATNGMDTYLDNAAPFQKTLNPLMKWFDGIEKKSKSDFRDSKPQYCAPMNIG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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