NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210402_10492870

Scaffold Ga0210402_10492870


Overview

Basic Information
Taxon OID3300021478 Open in IMG/M
Scaffold IDGa0210402_10492870 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1138
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007640Metagenome / Metatranscriptome347Y
F012143Metagenome283Y

Sequences

Protein IDFamilyRBSSequence
Ga0210402_104928701F012143GAGMADRLDLYFRAHTRPVTPQKEYRSKRRATQPKAALIFRCATTRDEKKDLLFGAYICADLQGAEYIAKEIGLFYRDGHPEEFPALTRFVKDSAYEFGSVEEFRRKVLLKYLKAGALIAAYDAPFEISRIAIKWNKSTKTRRAFSFYFRMFWDKKSGKMRPSGYEPGISIESIDAAKAIYRPIKYKFEERDAKKEEEKKFSNVHILDLKTLTSVLTGEVYSFPS
Ga0210402_104928702F007640GGAMIGHTAKTVLRRSRQQARPPRKVCPHCFEADHIGGHNHVPHVTVEVCQFHHAHLGEERLAAGAEMKKQPHRIKSVEMALRSLAVTARANAGAQEKLSEALESCAEKLKGKRAPAKPRAIKKHGRPT
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