NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210402_10674582

Scaffold Ga0210402_10674582


Overview

Basic Information
Taxon OID3300021478 Open in IMG/M
Scaffold IDGa0210402_10674582 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)956
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000602Metagenome / Metatranscriptome995Y
F008042Metagenome / Metatranscriptome340Y

Sequences

Protein IDFamilyRBSSequence
Ga0210402_106745821F000602N/AMLSTLTVISGFGRTTRAVLAVYPAARACGAIVLGIAVAAFYRGSREDVYNILWAVVFGFATLNILSLASRRMEPAKRGLSFGELMAVMVVVVSVCLLGWELLSMFHIFPIRLHR
Ga0210402_106745822F008042GGAMAKRRNIFFDVGNTLLFPNRARMLAPIPQEKHPTLDAWQALERRTKKEFDQGLITGKIDHGFWWTFHTYLLNEADAFDDTVRDELVENTQNSANWDQILPGTLD
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Institute for Fundamental Biomedical Research
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