NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10000004

Scaffold Ga0210410_10000004


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10000004 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)567131
Total Scaffold Genes525 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)397 (75.62%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003084Metagenome / Metatranscriptome508Y
F006150Metagenome / Metatranscriptome380Y
F006353Metagenome / Metatranscriptome375Y
F008825Metagenome / Metatranscriptome327Y
F024747Metagenome / Metatranscriptome204Y
F031408Metagenome / Metatranscriptome182Y
F084630Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0210410_10000004132F006150GGAMFGMAHARFGGGVAAGLIVSVLATASAMRAGEDPTIEELKVRVADAKIVDRPPLCLQISERQVGSAGRFYIAGDSEQMKAALTDVVAFSELARDYAIQSHKHEKQSEIAIRKMIRKLADLKHAVGHEEQEQVQNTIDGLQRVRDDLLIAMFPKVGKK
Ga0210410_10000004181F003084GGAGGMSGKPSVIAVLAVMCILGASAAAQDEVNQLTGMIGRTFISDQGLKNPVAPVINPFIRSGKGITFGVNYSRWLWGTSVYSISGEVPAVFNLDEDLNSGYNYVPADYKQIFVAPSVRVNLFPATAVSPWISFGGGFGHFSEGKTLVYGGKNPGGSSTTGVMQGGLGLDVNPFQHRFSRFGFRGEVRDFWSGTPSFPLASTGKTRQHNFFVSGGVIWHF
Ga0210410_1000000421F084630N/AMNPKPTESRPESHRKDLMATASVPRSQLAKRRSSRVALNAPIGLSGEDRQKCSFTMPAKATKLNKHGAAVQLNRELLVGSTVMVRNKSGTQVSARVVSQLAALEGVPTYAIEFAEQDDDVKTFWGITFPSVESRGASAQDTEQSGVVRRRRHIASQQH
Ga0210410_10000004225F031408N/AMKSKLDTDTTPAQKYRQFQSGLRQVLTVSKTELLEREKQYQDSRAGKPKRGPKPSSASGHVSSDGD
Ga0210410_10000004240F024747AGGVISVTGGLLCLPDPLDQGSQVKLMFLIHGGSVLGAAEMLSPVSQKLQPFKFVRLYDDDHRRLQAAIQLSLNQNRHNHGQIERGRAW
Ga0210410_10000004322F008825GGAGMDCVELQQSLAEVEDGSGVEQRAHLRACPACSALVQELNLIVTAAGELQAADEPSPRVWNSIEIALRREGLIRPQAKQPVVASFATRWGAARWLVPAAAMLLLAVGIYVRRESQPPQVAQQPHVAVPLANASDMDDADLIQEVADNAPAMMTQYRENLRQVNESIRDAQGVVDESPNDQEARRSLMDAYQQKSMLFEMAMDRSLP
Ga0210410_100000046F006353GGAGMKSSILVPIVLCAALPLAAQSAPSSIYAESFRHGSTQIVEESFSVSLSPQNQSYRERIKDSHGADRYIFSIIPQGPLGDTKITSWVVKLADLHHPIYDNVLLTSLDPSSDPRDALWRLEPTTFARVPVDARRVIKVDSFYVVLQVKAHHFTPPDSPYLDSMAVDVEFRDTDPRQPAATEK
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