NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10000013

Scaffold Ga0210410_10000013


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10000013 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)343119
Total Scaffold Genes281 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)217 (77.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003015Metagenome / Metatranscriptome513Y
F023657Metagenome / Metatranscriptome209Y
F049990Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0210410_10000013118F003015AGGAGMDRSHRLIAAVAFLLVGLGGIAQQSSTPPASNGNASAPASSASTVRGCLDGQRGNYIVVEDKTGLVYVLKGVGNKLDAKLHHEVEVKGRILSGTIKTGVNPNKSGSNPSDTARGIDGVPLQVANVQTDIRTISKGCKAADQQ
Ga0210410_10000013138F049990GAGMSVSMLQKVICWMLIVVTPTAMLAADTGSGPAMLYGRGPVGLNGKPLPNSSAVFPGDVIETQPESVGTLDASGSGVVIFPDSLIKFEGNAVSVEHGAVSVATSKGMVGLAREVTVTPASNSWTEFEVVDMNGTVQILANKGSVNVNCRKGTVNLSEGEYAFPDKSGKCSKGKRKPGTPVPGDDSVLTNPFVIGSELVGGGVIVCLLLCNVSKPFLSQWKP
Ga0210410_10000013193F023657GGAGGMATAGNPTAQGWVWRDLYVTALMEGDREKTPGRIADAELAILNRARELFRASGDNIQEEEALDDALYALRALKNCLQLPSGLAEAA
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