NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10000041

Scaffold Ga0210410_10000041


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10000041 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)220611
Total Scaffold Genes219 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)167 (76.26%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001348Metagenome / Metatranscriptome717Y
F013105Metagenome / Metatranscriptome274Y
F013941Metagenome / Metatranscriptome267Y
F044614Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0210410_10000041106F044614AGGMVVLISALLAAGAPISIAQMRGPGLSGARASSGFGHGVGIPFNGRSHSHSFGRGAIFFGDPFYEDYPVAPLTMPPQFVVAQPPAAVEPPIETKSEPLMIELQGNRYVRFGGTQQSPERSTNSEPDYSEAKAGDSPHLTERRTKPELPPTVLIFRDGHREEIPEYAIVGSTLYASGNYWQSGQWTKTIQLSALDIPATAQANHQAGVNFMLPSGPNEVVTRP
Ga0210410_10000041117F013105GAGMASCLFAVALLNPAGRAQQPSTQPPVQSKSSGKASSTILDAGTISGEAYRNTSFGFTCKIPFGWVDRTNEMSRDSNGDSKVAKQSILLLAVFEHPPEATGDSVNSAIVVAAEPTSSYPELQNAGQYFGPLTALTKSKGFRVVNEPYDFPVGATPLVRGDFAKTLGNLTMHQSTLVMMAKSYVLSFTFISGREDELDELVEGLNFARKEAPAAHK
Ga0210410_10000041127F013941N/AMAPYAGAGLGVNGLGFQSPYYNGDVGVDWGEFRPTFLEAEAGADTANPNGLNNGTTVRAHGVVLVRATPHWRFGGGVHFSDLFTSKYDKRSVWPSLGAMFEKDWFRLNTQLLIPASSDNLIGPLFDVRMHLRKKFYFRERVGVYWYVGSNDPNPSRHASAAVDFGVLYVFRGCGKNCE
Ga0210410_10000041153F001348GAGMFVTAEQKVLQSVAAQLMNGEAVVLEDQKLRVKRVGSGRLRMVEFQLNGRVFDAIEQNPTKPSRWGKLAREKHQVVQFRDLATRKYVAVSVDGEIMEYGR
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