NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10000127

Scaffold Ga0210410_10000127


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10000127 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)115085
Total Scaffold Genes117 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)93 (79.49%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000173Metagenome / Metatranscriptome1777Y
F002681Metagenome / Metatranscriptome537Y
F003829Metagenome / Metatranscriptome466Y
F049800Metagenome / Metatranscriptome146Y
F056877Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0210410_1000012748F049800GAGMATRHPLPGMRWLFWLRNASLRNGVLTGVYLSCVFVSWLYVANRVKELEPFAGIRNVAAGAAVILIMSIPLLRFRREPVRIFVSGLTAWTLLTLTYMAMEMNFSLLESRMGAFHVFMLGAMTYGFVAVFHWVFLLCVEARHRHVAQSEHGSVSASRPHLH
Ga0210410_1000012755F002681N/AMNPRKSTQWLGAYLFGLCLYQIGIYFWPGGPPFILDPRAGIPVLLINHFSFDNKVIYPVEWITAAWLVLMAAMIFFRGKLLKTYLISELVLAAPTAYYIGVLAIQHGGHFAPAFNDLLLTIFLFCVFSAVPVGLAARKIARLPVRSSGTPG
Ga0210410_1000012762F000173GGAGGMKTFEVQLRYRDRNEESVEATVKVDASSLPGAVAKAAREFVKGLDRKQRFDMNKNGLEITAKLVNSATEAKVETSSGATAR
Ga0210410_1000012764F056877GGAGMGLMMQTQQDIRSTLQTNFPEGSRILIVCDDDCDTRQLRTLLLEAGFPVDCAKSLRAGCEAAKSGQFQVVISTPLLKDGSWRRLTDIANHSDLRFEVVLWARSFDLREWAEALENGAFDVLDAVYEKPRVVEAVKGALWAAYLKGAWPRPKASRPSRVA
Ga0210410_1000012794F003829AGGAGGMNPLTQTQVRIGEDMNRSGAPLKVPEGARILIVCDDNSDTDRLKKILLEEGFVTEWAKSITAGCAAAKSGQFQVVVSTPVLSDGSWRRLTDIASHYDLGFEIILWARNFDLREWALALNEGVFDVLDSMCEQPKAVEATKRALWSAYLKGAGPNPKAAIPQKAA
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