NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10022531

Scaffold Ga0210410_10022531


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10022531 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5444
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000703Metagenome / Metatranscriptome928Y
F000781Metagenome / Metatranscriptome895Y
F099605Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0210410_100225314F000781N/AMLTVSQIAPLKDRDPYLYETLTKIVASVNATSQRAGVDPSTPAPAPTPIASMTVQASNGWFDISVADPSDARPGLFYFAESDTTPAFSAPRVYFMGASRNLYVQLGNQTLYWRVFSQYIGSLPSAPVTFGSPPTAVAGGGSSGPAPLPSSGSGVLPNGLLRGGNGFGVNPGSRVLKQTLL
Ga0210410_100225315F000703N/AMRVREYTEHDLEALQAIHSAQGFEYTLPDLRNPLFVTKLVLAENAPANGNQAGEEFSVSNSQSGRIVGAALLRLTAEAYLLLDPDAGTPRERWQWLLALQAAAGRDAWQRGLEDVHAWLPPPIAKKFGKRLERLGWIRDDAWTPYCRRLAVRD
Ga0210410_100225316F099605AGGAGMPNTTQSASWDFNPNDPVNLSASFSFDTEDTQDSAPVATALTAIQARVARAALTAVQSDPATITVTVTI
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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