NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10159277

Scaffold Ga0210410_10159277


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10159277 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2014
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013147Metagenome274N

Sequences

Protein IDFamilyRBSSequence
Ga0210410_101592772F013147GGGGGVIPKEFERSNLALELKAGKKRLKLVLHGLTNEQCGVAGAVQSDSISGLVSHLIKNEFLALNEACERLAGSEKQSSGVERRTRFVERRRQADPNRSIESLLAEFEVVRSAIIRLVEQGAGKNAHYGTLAEVCVARFNVHIEQIERWRDSQLVGFSATPLREEALEPELNAAILEIGREDFLLENFDLQSLFSESLNRYYSDEVVLWLGTELTNGKQAAFQRLADVLEPVHTVLEMGVGCVDVFRVVSSFQDSQGDFISEWEAVLGGPYSTGAAIRWRTVRVWKQRVVIAERIESLPSVGQKGT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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