NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0190337_1000048

Scaffold Ga0190337_1000048


Overview

Basic Information
Taxon OID3300021499 Open in IMG/M
Scaffold IDGa0190337_1000048 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-10-11_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21419
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (58.54%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046123Metagenome151Y
F055333Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0190337_100004819F055333GGAGMREGDEGGEVANPAHEERNAKESLQNVRAVKVCLAGRSTGMGAYTEWTLYSTRQRKRLKPHRTEYSRTGNHWWHYFFLLPGKYLAAVKDISNSGKHYCRYCLIRVFTQEEYREKVKNDERVMQNFDRYYRHYGYEIIDLPSERPPAPYVEPPCECLREKVEW
Ga0190337_100004824F046123AGGAMPCPYKEGSEYCWLCWNWIEGAEYCLYDEDDPQREFVLIDEFKDIDPKTYNERMQMLKDMGLIPLHRAVKAGFVKQQRTLSDFGVVVMRDVENRQNTAEGI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.