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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021513 Open in IMG/M |
| Scaffold ID | Ga0190315_1004001 Open in IMG/M |
| Source Dataset Name | Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-11-0-1_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5040 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mexico: Guaymas Basin | |||||||
| Coordinates | Lat. (o) | 27.0118 | Long. (o) | -110.5962 | Alt. (m) | Depth (m) | 2005 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009582 | Metagenome | 315 | Y |
| F011723 | Metagenome | 287 | Y |
| F028993 | Metagenome | 189 | N |
| F091133 | Metagenome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0190315_10040012 | F091133 | AGGTGG | LGIFDVWASWTDWLSDWWDAFKDKVWDIKCELWSWVDDIAKYWVKQADMFFDILKHTWSEVEDLMEDAKTYADNIVTDAILKIDSWVATFGETVAELWNKLEPYVSGLITPIETALDTIQNIKIPSLEDITNALNESVDNILNWDIPLLNQSVSDLWNEANKIWNEIWNNIWTSLNNAWDDINNIWNTFAEIPADIWNAITEGWEGFSDFLLSQGEKFVEKILDIDIPVDDIIEDLERKFKGGGK |
| Ga0190315_10040015 | F009582 | GAG | MPAKRRRREFIGGTGRAVKEARVDVILQRVNEKIGSELDVSPSHIYRYGVNNIFQRTFAYLLGWKTNGEPQKVAVTEGGLLKVGIAGAGFEDISVLKGTATVTWSDVLEFSFVPNRIRFESLDYPYCVMFSKDNVTWSEAIYVDEGTPRDYDICAKYVKVKRYGGTDARYWIVGMR |
| Ga0190315_10040016 | F011723 | AGGAGG | MVIYNKGLSRDNSTDEGKTIFTLASKEEEKYKVRRIVITDINTNPLVMEIWLERDRIGENIPLEVIADATPERVIDVDVEIPIGYTFKVIIKPQTSGNQGSVRGWVEYEVIS |
| Ga0190315_10040018 | F028993 | N/A | EGVEAPSKDWLEQFKKAKDRRNAGLRRAIEEGLFEKGAERVGTEGWQKATLAKADRWLTGATSEEANEKYAERMRDVAECIERARKAVEGMPTTTVEQRAEKSKRFQIEMAKCMEAKKRG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |