NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194048_10002662

Scaffold Ga0194048_10002662


Overview

Basic Information
Taxon OID3300021519 Open in IMG/M
Scaffold IDGa0194048_10002662 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8831
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (78.57%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Associated Families11

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.697Long. (o)-93.722Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000980Metagenome / Metatranscriptome814Y
F001562Metagenome / Metatranscriptome670Y
F004051Metagenome / Metatranscriptome455Y
F006744Metagenome / Metatranscriptome365Y
F011299Metagenome / Metatranscriptome292Y
F013527Metagenome / Metatranscriptome270Y
F015208Metagenome / Metatranscriptome256Y
F017995Metagenome / Metatranscriptome237Y
F024319Metagenome / Metatranscriptome206Y
F074868Metagenome / Metatranscriptome119Y
F085708Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0194048_100026621F024319AGGMTNRIWESLNDYTLESDAKRLGYVACSAGCGRVTAWSLCTMCGGNYATHNLVGK
Ga0194048_1000266210F006744AGGAMNLDEFKAHVLATRQASKTEAMSVLSATISKSTTTEGDK
Ga0194048_1000266212F017995GGGGGMSKIKEYIEIIAANCDECGGAGFVFFGDENNYDVEPCDCIADVSDELTVDWVNE
Ga0194048_1000266213F015208N/AMYKITCTYDESPTPYVELEYADALQAFEEFAKFVDWGFADKYSTVNLSMPTGKMYTKIFYREGRKVITK
Ga0194048_1000266214F011299AGGMMTRKHFEATAEILKYGSNKMHPALFSKMVNDFAVMFANENPNFNVNKFHEASGYHVPQF
Ga0194048_1000266221F004051AGGAMTIDNKVYEVGDLFTTLKSHKTGIIKEIIPNASGSVRVLLEMPSKETRWTTVKVAE
Ga0194048_1000266227F000980N/AMTRYQKYTWVCTGDCDALIEYTIKDGYGWPGGVMQLTCPCNSKCTLVSVEDATIPYTDTPLTKEEPMETETPAVIVPDTYNANLLVTYKVIHGYSDATYETDKVASIEWSLHNGRQSQKQANMYVSKISTVKDIITEAYEDSDDKETLRAIAEALDIELVKEVQFTASIEVSGTYSFNVLESDYDLDLESEVTDALYADSQNGNITIDDTEVCNVRES
Ga0194048_100026625F085708GAGMNRLLTSLVQVALLVPALYMGRMMWREIVADFREWDKSH
Ga0194048_100026627F074868N/AMTTLEKTNIGLALGISGALENRILHDWNNGGAKSAYGLSVWQRKALLKILISESPKCFCVNCLGVK
Ga0194048_100026628F013527AGGAGMKTFEFLTYINVEAESYDEAIDVFQFQLKYGMNKDNVYCADIKELVSE
Ga0194048_100026629F001562GAGMKTQFEKDLEIKESFIDLLNDVYPIVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAEMEDES
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