NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194048_10007053

Scaffold Ga0194048_10007053


Overview

Basic Information
Taxon OID3300021519 Open in IMG/M
Scaffold IDGa0194048_10007053 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5276
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (94.44%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Associated Families11

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.697Long. (o)-93.722Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F001562Metagenome / Metatranscriptome670Y
F002245Metagenome / Metatranscriptome578Y
F002598Metagenome / Metatranscriptome544Y
F004051Metagenome / Metatranscriptome455Y
F015208Metagenome / Metatranscriptome256Y
F017829Metagenome / Metatranscriptome238Y
F020168Metagenome / Metatranscriptome225Y
F029434Metagenome / Metatranscriptome188Y
F050376Metagenome / Metatranscriptome145Y
F097310Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0194048_100070531F050376AGAAGGMNLEEYKAHVEAQRKESLLKAIATMSEANAKMSSLFNTEEAK
Ga0194048_1000705313F020168GAGMIDILGSLIGIILIAFLCSPIVLAVYMWTSVKIDNDHDGKEDLPNRWSK
Ga0194048_1000705314F002245AGGMSNLMTVPHTVTFEAIIDLDKIPANLLPAILALDTYSVTKMCKEATLHALTESNLLKIANEFNTWAEITVKAGN
Ga0194048_1000705316F004051GAGGMTIDNHTYEVGDLFTTLKSKRTGVIKEIHPQASGSVRVLLELPTKETRWTSVSAKALLG
Ga0194048_1000705318F017829AGGMANRFRVEIYDANKANDITIYSDQGVDKEYLTELVFSNIRNFSGKINAYVFDNANKKKTTAMFLDENTVQFNKNIIDKAKRIEFGN
Ga0194048_100070532F000447AGGAGGMGYVEIFRIDEEGAGWVDLSEATPDELFNIEIGLLNEGAFE
Ga0194048_100070533F029434GAGMKKYTFGVWLDIDAEDEDMALSLFDSVVKHPFVSDSYCFEWKEVADEIAI
Ga0194048_100070534F001562GAGGMKSQFEIDLEIKESFIDLLNDVYPSVKIGYSTFTPAEILECCDPIAFSIGLIEHEDYLAEMENE
Ga0194048_100070536F002598AGAAGGMATKLYTIESLLVGQNYRSRNRHFYGEIVSAKPRPEIWYGDKTEAFLIEVRAGGLRNKFATVAVKVGE
Ga0194048_100070537F097310GAGMSKMKELLDEIINCDLCNGKGWLFAGNAIDYDVESCECNPNELEVNY
Ga0194048_100070539F015208GGAMYKITVAYDEQPAHATFSYGDELQAHTEFAKYVDWGFADKFATVNLYTPSGKCYTKLFYREGRRVVIK
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