Basic Information | |
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Taxon OID | 3300021519 Open in IMG/M |
Scaffold ID | Ga0194048_10007053 Open in IMG/M |
Source Dataset Name | Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5276 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (94.44%) |
Novel Protein Genes | 11 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 11 (100.00%) |
Associated Families | 11 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Ontario | |||||||
Coordinates | Lat. (o) | 49.697 | Long. (o) | -93.722 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000447 | Metagenome / Metatranscriptome | 1128 | Y |
F001562 | Metagenome / Metatranscriptome | 670 | Y |
F002245 | Metagenome / Metatranscriptome | 578 | Y |
F002598 | Metagenome / Metatranscriptome | 544 | Y |
F004051 | Metagenome / Metatranscriptome | 455 | Y |
F015208 | Metagenome / Metatranscriptome | 256 | Y |
F017829 | Metagenome / Metatranscriptome | 238 | Y |
F020168 | Metagenome / Metatranscriptome | 225 | Y |
F029434 | Metagenome / Metatranscriptome | 188 | Y |
F050376 | Metagenome / Metatranscriptome | 145 | Y |
F097310 | Metagenome / Metatranscriptome | 104 | N |
Protein ID | Family | RBS | Sequence |
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Ga0194048_100070531 | F050376 | AGAAGG | MNLEEYKAHVEAQRKESLLKAIATMSEANAKMSSLFNTEEAK |
Ga0194048_1000705313 | F020168 | GAG | MIDILGSLIGIILIAFLCSPIVLAVYMWTSVKIDNDHDGKEDLPNRWSK |
Ga0194048_1000705314 | F002245 | AGG | MSNLMTVPHTVTFEAIIDLDKIPANLLPAILALDTYSVTKMCKEATLHALTESNLLKIANEFNTWAEITVKAGN |
Ga0194048_1000705316 | F004051 | GAGG | MTIDNHTYEVGDLFTTLKSKRTGVIKEIHPQASGSVRVLLELPTKETRWTSVSAKALLG |
Ga0194048_1000705318 | F017829 | AGG | MANRFRVEIYDANKANDITIYSDQGVDKEYLTELVFSNIRNFSGKINAYVFDNANKKKTTAMFLDENTVQFNKNIIDKAKRIEFGN |
Ga0194048_100070532 | F000447 | AGGAGG | MGYVEIFRIDEEGAGWVDLSEATPDELFNIEIGLLNEGAFE |
Ga0194048_100070533 | F029434 | GAG | MKKYTFGVWLDIDAEDEDMALSLFDSVVKHPFVSDSYCFEWKEVADEIAI |
Ga0194048_100070534 | F001562 | GAGG | MKSQFEIDLEIKESFIDLLNDVYPSVKIGYSTFTPAEILECCDPIAFSIGLIEHEDYLAEMENE |
Ga0194048_100070536 | F002598 | AGAAGG | MATKLYTIESLLVGQNYRSRNRHFYGEIVSAKPRPEIWYGDKTEAFLIEVRAGGLRNKFATVAVKVGE |
Ga0194048_100070537 | F097310 | GAG | MSKMKELLDEIINCDLCNGKGWLFAGNAIDYDVESCECNPNELEVNY |
Ga0194048_100070539 | F015208 | GGA | MYKITVAYDEQPAHATFSYGDELQAHTEFAKYVDWGFADKFATVNLYTPSGKCYTKLFYREGRRVVIK |
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