NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194048_10055218

Scaffold Ga0194048_10055218


Overview

Basic Information
Taxon OID3300021519 Open in IMG/M
Scaffold IDGa0194048_10055218 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1591
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.697Long. (o)-93.722Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006110Metagenome381Y
F007519Metagenome / Metatranscriptome349Y
F034467Metagenome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0194048_100552182F007519GAGGMTTGIEELKLEKKRRGRGVGKKPSLFCTSLRLPKDVMDYFNTNFAYTKQAKMREVLTEYVNNQTGNKS
Ga0194048_100552183F006110AGGAGMPRPKPPEPLIGRQVRMSDRHWIIFNHLGGAQWLRELLDKKAPMPKKYYEGLLNDNRN
Ga0194048_100552185F034467AGTAGMLDKDDEMKEEIKYSSKAMPLRLCTDPKFKYRNASQTDVRRTWRKARLLMLLTNGAAYESRT
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Institute for Fundamental Biomedical Research
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