NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194048_10237746

Scaffold Ga0194048_10237746


Overview

Basic Information
Taxon OID3300021519 Open in IMG/M
Scaffold IDGa0194048_10237746 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)666
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.697Long. (o)-93.722Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014107Metagenome / Metatranscriptome265Y
F068572Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0194048_102377461F068572N/AGPYIANMSAIDTQSATDFLAKNKMTIWAVNQSANRSIPTSR
Ga0194048_102377462F014107GAGMSLNQILDNSEAVGINDQRFIGQVLSRNQRISTSEIITVVPFAFEMKPMNYLRYSQNRGLLNSLRIPDKALEQYLNFSTTGWLNYVIYQGDMTSSQVSACQWLSASLNKILVLGSLPSISSTAYIVKAGDFCQVGRYSYIATDDVQRGSGTTVSIPVHRNLITPITSPISAVMGQYGTTV
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