NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224714_1084491

Scaffold Ga0224714_1084491


Overview

Basic Information
Taxon OID3300021551 Open in IMG/M
Scaffold IDGa0224714_1084491 Open in IMG/M
Source Dataset NameMarine sponge Stylissa sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - st43is 200bp no Eukaryotes last
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of New South Wales
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)1289
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Sylissa Sp. (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location NameUpa-Upasina (low pH), Papua New Guinea
CoordinatesLat. (o)-9.8241Long. (o)150.825833Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000999Metagenome809Y
F030780Metagenome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0224714_10844911F030780AGGMTDKVKQVIWVFDIEENKKKRINLQTLLNRANHSFRHENIKYFALEKDR
Ga0224714_10844912F000999AGGMNIEDLKKEVERIEAKSDFVVSWWAKKYKKTIRRLGTLNKEGCRVWEQGGKKYMCFWDVVIERYTTCIDPVITYKKGLN

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