NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210409_10004326

Scaffold Ga0210409_10004326


Overview

Basic Information
Taxon OID3300021559 Open in IMG/M
Scaffold IDGa0210409_10004326 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15392
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F005283Metagenome / Metatranscriptome406Y
F059669Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0210409_1000432612F059669GGAGGVTASSTKYTQPPWEFLLTASRNTLQSYELSRLSHAANLRKEITSLLDQWLAENAAATLARLLIDHPDRSVLFREDADASSVDTSGNGTKPASDNFLAERRVPPHVSRAHG
Ga0210409_1000432615F000188AGGAGGMSVKAEMAFDVCWELYREAREVLEAKRGVAALDLKEGTKYSWRPDSRPKLKDWVADFALAGQAALEGPERASRMVMFRLYYLGLAPYERARHFLGLSEGGWVNWSEEIRRRCGEEIVRRGMFPPRKYFGGEA
Ga0210409_100043268F005283N/AMELTAVQMQVLERLFAAGFRPIAIPPYENALCVHRGECAAVLTQVENGGLRLLSPVTVMVDGNLSVKLKRASGDVFVWKKKEVAATAERLKELEEFRGELVGILELGGKQ
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