NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210409_10027129

Scaffold Ga0210409_10027129


Overview

Basic Information
Taxon OID3300021559 Open in IMG/M
Scaffold IDGa0210409_10027129 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5526
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000703Metagenome / Metatranscriptome928Y
F000781Metagenome / Metatranscriptome895Y
F002853Metagenome / Metatranscriptome526Y
F099605Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0210409_100271294F002853GGAGGMSRAQDFTRQLTDQQLASLNSLNQQFLGQQQQVGNLLLPQFQSILNNPGLSPADKAAVTGQSQGALASAFDSLQQSAQNRLARTRNSAGFGELTDELARQKGIAEAGQAQQNQLAFTNTAFQRQMAALQGLSGLFGMDSNLLGRTLGIPAELLNVRANASRGTGNGFFSALGSGVGSTLGALPGAFL
Ga0210409_100271295F099605AGGAGMPTTNNAASWDFNPSDPVNLSASFIFDTEDTQDSAPVAAALAAIQSRLSHATLTATQPDGATISITVTI
Ga0210409_100271296F000703N/AVAGLQPGLLWSAAARRAFLDQSTEVFMLVREYQERDLAALRAIHAAQGFDYKLPDLSNPLFVTKLVLTDGNAEVEKENRESEGNCPIFGAALLRLTAEAYLLLDPKAGTPRERWQWLLALHAAAERDAWQRGLEDVHAWLPPSIARNFGKRITRLGWRRDDSWTPYCHKLTAHQQR
Ga0210409_100271297F000781GGAMLTVAQLAPLKDRDPYLYETLVKIVASVNATSQRAGVDPSTPAPAPTPIASISVQASNGWFDISITDPSDARPGLFYFAESDTTPAFGAPRVYFMGASRNLYLQLGNQTLYWRAYSQYVGSLLSAPVTFGAPPIAVAGGGSTGPAPLPSSGSGVFPNGVPRGGNGFGVNPGSRIVRQTIL

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