NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210409_10131961

Scaffold Ga0210409_10131961


Overview

Basic Information
Taxon OID3300021559 Open in IMG/M
Scaffold IDGa0210409_10131961 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2294
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036810Metagenome169Y
F045709Metagenome / Metatranscriptome152Y
F070426Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0210409_101319612F036810AGGAGMSQPERIRVSRWTQLRSFAVDKYKAVQLLIERRSFESKLERIVRTALANQSVGLPAGHPQFKLLRQQADSTCANFAHRWNITPDLLDAQIPAIRKLKSLADPSPKPEPAILVSLGVGSAVVLFFLIGVLAGLTSVGYHLIGGR
Ga0210409_101319613F070426GGAGGMLLELIVATEASVLSASWIRRSRMRRRQILLGGSTPEITLPFLDRYLKQQTTNTTRLQTFAAQKLTAICRRAVHTQAFELLLLKLIQSASRRSRRESEISKVKVIL
Ga0210409_101319614F045709AGGMNLTPSQKGSFLAGIGLWVLIWASIWKADDIAQAMRIQRWFNSSRCIRWIGQHKSTSLLGTEVINYGTHGLDPLGVSFSLGGTLVNVFFIYLLLPCLEKLLRQKGTINATIQ
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