 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021560 Open in IMG/M |
| Scaffold ID | Ga0126371_10008548 Open in IMG/M |
| Source Dataset Name | Tropical forest soil microbial communities from Panama - MetaG Plot_4 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9210 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (68.75%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Panama | |||||||
| Coordinates | Lat. (o) | 9.1086 | Long. (o) | -79.8436 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026149 | Metagenome | 199 | Y |
| F076914 | Metagenome / Metatranscriptome | 117 | Y |
| F095201 | Metagenome | 105 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0126371_1000854810 | F026149 | AGG | MDQDSVKLGLLMETAQTHQKLAEAAIEKLSEHTQALEAVARDQIQRALVDALKTVHAEVQRAVEALRRMKREANARVTLWTLALTVTSAAIALFIAWSVLPTPVEIARLRTERDELAGNIAALNQRGARADLRRCGAGRVCVRVDLSAPRYGESSDYMVIKGY |
| Ga0126371_1000854811 | F076914 | AGG | MSIPASTLVKDTRPTVAADLGSCALWVAWQSIRLPLFLFLLVLEPVVTFVLGALALLGVLTALFWKFFGPPNFPFFLMLGISLGFELTLIVYRKLLRLLA |
| Ga0126371_100085486 | F095201 | AGG | MRIQEEHASNATSHMRPPVLCRIERNSKGAPPAAGVGAGKQEAKRGPKNRPTYRLWEHATWRVRMRAWCNSIKSVLLGDRHEPARSQTYKVLQSEKCPIDNASTWLTWWAGDAVPRPGHVRAAERLASGSSKLLDLSEMGTPELRHLMALDILNTKFRQSGRPSLYQRTQSQLLLTALNEAWTPFLSAHTPVNGARFALETQVGKEGATLLNPVLVDETRLQVINEGGNLRRFALPRAAILEHSWLEPMSIFRFLGALATFSELDNPALLRMWACDFASAALVVRTQLELADKTDMQIWRMGRAGIIYILAAITFWAHFPPQFDRWTIEMAKELNAAEPLQIRERLLAARSAYYGVFAGWGIPVRTMRALNADHSKKTWDGAFGAARARI |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |