NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_10021649

Scaffold Ga0126371_10021649


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10021649 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5938
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000284Metagenome / Metatranscriptome1378Y
F004853Metagenome / Metatranscriptome421Y
F005673Metagenome / Metatranscriptome393Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_100216493F005673GGAVRHCSPEFRVRLCLMNCDRVIADAIQAAQHLLWHRYDLPDAIKVVRLRKLVLSRTVQSALQRSSDTLLPFTLHAVELVIADQSRTDREMIRQLRDILNNPQLTQAVGPQNPPFRGWH
Ga0126371_100216496F004853GGCGGVQDRIANARTFGWLIYAAGFAVWLFGYFSPGHAPIFDWNATTPRWISSFVPNLEAELGMALMFASMIPIYGRAIGGNLGPLFAFAALLVFAAVTLAWWGFLAWFIWHVV
Ga0126371_100216497F000284GGGGGMKAVLAAIALVCLSTTVLAHDIYSNLRDREGHLCCGGQDCKPVQATVLPDGNYYLPETGEIIPAEMATPSPDNRFHHCVYYPMLPMQLDWAGPVFESTPKTRCFFAPMRSS
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