NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_10140353

Scaffold Ga0126371_10140353


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10140353 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2467
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022093Metagenome / Metatranscriptome216Y
F034727Metagenome / Metatranscriptome174Y
F079016Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_101403532F079016N/AMKSVKIDSEEASSCAEELWGELIGIDDRTDRERTFTIYKRSGSLLIVSDSGCERLAGPDEGLSKTRIFQEVMDQFDVHAVRRKR
Ga0126371_101403533F034727GGAMTTDEVLDALGRYIKESQESDRQTATKLGMKCPILEDWLSGKSRPQKGALARLAGFLRRTGYL
Ga0126371_101403534F022093GAGMLDEPWLRMSMLMRVEFSRGLRPNSPRFVLVVEIPDSAVAELNEKKISLEKRAYEIASEVRNADHLNKPESQMGLMSCTKAKVKNLEALGEPSLLTHDACRAWVIKRPSPMDEILDKSWQSRPRNPGSSS
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