NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_10279376

Scaffold Ga0126371_10279376


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10279376 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1791
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001473Metagenome / Metatranscriptome688Y
F019638Metagenome / Metatranscriptome228N
F072572Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0126371_102793761F019638N/APFAIQEGSGEIRNGMVTFSNLPQHPAVRTRKARVLRSREERREFLTACEKTLGSSFSVFVDGDPASIRQLDTDAKKQAFLEHAPVRPWESQQFQGARVEQ
Ga0126371_102793763F001473GGAGMESEYQTVGQMYERLRLMIRQRNDTGFRLAVTDAVFEPRNPFEPANKRRPKSVVAIILILAVVLALIFLYFSFHHAR
Ga0126371_102793764F072572AGGAGMASNATKIANEPEDTRSELKADAEIQDILFSDLATSVCYWTTIFLLAVAGAYLIRWWLIHPGSYAATVNDPWGITTP
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