NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190351_1000042

Scaffold Ga0190351_1000042


Overview

Basic Information
Taxon OID3300021587 Open in IMG/M
Scaffold IDGa0190351_1000042 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-9-10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13175
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (74.07%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033663Metagenome176Y
F048033Metagenome148N
F057026Metagenome136Y
F093027Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0190351_10000421F093027AGGAGGMKLGILSILMALLLCIGTVSAFSSIDYSIQASDAVVSVDMSYSNILENETMLGSQAVRLDHMDVTSVGIIMGDDTGVVLNNTLKAMPVRNCLISSGMINQNFVSAIRTKDSYDLGVTGFRAGGRIMDLTSDVQVEQGALSHVVRGQVAGSVGMGLITQTPTNRFESIVHSRSALQNVV
Ga0190351_100004213F057026AGGAGGMGRDEQILVLEEMICLFEEAMKGLESAYEATEDENQKLKLTGGVLVFEFVINLMKKKVELLWN
Ga0190351_10000427F048033AGGAGGMIVTRLGDMIVVNIDKDNFYCEREGSSLVDIWEEHARYIGKGDTLYVRQVEGEDLSEDMQKLIKKFRDAGKTIEYVDADRYDAYKGEVRFHTKNFEDEE
Ga0190351_10000429F033663GGAGMQGTKTDNVTHVYGIRCKTKNEKIQEWDYDSLTNITFLYKQRRALFEDIQEDGMAVPEFFFEIKRDMSMLRDLVLGKFNILLVIEEEN
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