NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0226832_10001882

Scaffold Ga0226832_10001882


Overview

Basic Information
Taxon OID3300021791 Open in IMG/M
Scaffold IDGa0226832_10001882 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6602
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NameDaikoku vent field, Mariana back arc basin
CoordinatesLat. (o)21.3250983Long. (o)144.19162955Alt. (m)Depth (m)409.13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002330Metagenome / Metatranscriptome570Y
F004879Metagenome / Metatranscriptome420Y
F039829Metagenome / Metatranscriptome163Y
F101302Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0226832_100018822F002330N/AMIICDIMLKQIKQINKTLKIGDRFTIYYAPTFTKNGEDQTTIYDPHQYEVNVRSAIWDEKCKINKTGSLTYFDVEKNSHRTAIQTLQPVRIYLNKIMYVWKEGK
Ga0226832_100018824F039829N/AMSLKVKDVIRELKKFPDNYKVSLETYNESKDNEGGYDKTNCISVDKDEDAENFVVIK
Ga0226832_100018825F004879N/AMSKNNEMQLWKRDHFESKIDKLLEPEIEREELKIKTTVNKILDKGIKSFSKSIGADKVIARLEKAEHEKREASRLAYTFFNNKASSVVSYNKAKEYKFDRDEKDTISVRDCTKQLEKWAEKQAEQYAETTEQGKRLNFLKTLRDSCKDKVKEATVSDELKATLDNLMKMVGVSWERKLPALPKPKK
Ga0226832_100018828F101302N/AMGDRVSISFQQKADWYVKGKKEEHLEESPVLFHHWGGTDFPKFAFDWFKALRKHLKKNHTGSDPLTRLEPRNLMVQFINAIRDEEAFRLHHYENKTKDINGGTWSIDDNLLSYSIYLGKDSNDGDNSDNGHYTIDVDAGKMFDDKGQSIG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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