NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0226832_10002766

Scaffold Ga0226832_10002766


Overview

Basic Information
Taxon OID3300021791 Open in IMG/M
Scaffold IDGa0226832_10002766 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5503
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NameDaikoku vent field, Mariana back arc basin
CoordinatesLat. (o)21.3250983Long. (o)144.19162955Alt. (m)Depth (m)409.13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005749Metagenome391Y
F013775Metagenome268Y
F015023Metagenome258Y

Sequences

Protein IDFamilyRBSSequence
Ga0226832_1000276610F005749AGGAGMKKSWLLIMSFDEHDGSPNEIKTLYHGKTKRSMVKHMNLLQDMNEHLVLSLVEVDKKSTYDDFIRRDDSEEMFFMDSKSNWNNGKTYEDLKEEALEEMLMGSLINGDMGYA
Ga0226832_100027665F015023GAGMKTTFKHIDLNDSVNDFMNHLNNNMDKPDGYSYELNTRGSKYFKVEMNTRGSRSVYCFINKRNGEILKAAGWRAPAKGSRGSVLVPDSYTNSDWSGGWLYKIFGNVYNTIG
Ga0226832_100027668F013775GGAGMKQEYETIREFAKDYRLEIVPMMKSKGFGISISTSKGSYYYDGRLNFQIKKIPSNFYVWTNEYNRYSKTVKSQKLLSTIRERVTKLVAENTSLDVDLNFGYHKSVGWKEVPEGWDDERNN
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