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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021791 Open in IMG/M |
| Scaffold ID | Ga0226832_10004012 Open in IMG/M |
| Source Dataset Name | Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Marine Biological Laboratory |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4601 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (40.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Daikoku vent field, Mariana back arc basin | |||||||
| Coordinates | Lat. (o) | 21.3250983 | Long. (o) | 144.19162955 | Alt. (m) | Depth (m) | 409.13 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002667 | Metagenome | 539 | Y |
| F017252 | Metagenome | 242 | Y |
| F060453 | Metagenome | 133 | N |
| F061374 | Metagenome | 132 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0226832_1000401210 | F061374 | GGAGG | MDWMNAPTKVANDAGRNVGGIKAAKTINLQISYWALLEQIRSKMGFKNGNEAMCYVIMEKAKEIGLETG |
| Ga0226832_100040123 | F017252 | N/A | MPQVIQGYLVNVKPSDTTAESTYVSDVVAAGAAATTIHYPSQYRSYAISAAIKNQDPGNACTFSVNGQPPISLGAGADQNINNQSIVSIQVTPGAGGTTDILAQVSPIYVSTEAQRFRTESG |
| Ga0226832_100040125 | F060453 | N/A | MIISVAFKLKTGKTVNKVLAGAGIVALGTLVLNAVSPGLMQGSLGKVILPAVSFGVGGLESVAGAVVTEFAGHASGARALDNTLTESL |
| Ga0226832_100040128 | F002667 | N/A | MEILSASLILVASICAGLSCVFIARGRSTINKHSRQRIKDYEADIKYLGEVKKADAAEYRQEILRLKGSINKMKQGTTVTETDMKNASGLGDVIMQLIPNKYRKAASFLVPQVEEAVKKDPAIIERVYEKIKSANTTSNKQTQSGTEDQGVQTL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |