NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0226832_10010905

Scaffold Ga0226832_10010905


Overview

Basic Information
Taxon OID3300021791 Open in IMG/M
Scaffold IDGa0226832_10010905 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2902
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NameDaikoku vent field, Mariana back arc basin
CoordinatesLat. (o)21.3250983Long. (o)144.19162955Alt. (m)Depth (m)409.13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000747Metagenome / Metatranscriptome908Y
F000929Metagenome / Metatranscriptome830Y
F034956Metagenome / Metatranscriptome173Y
F035335Metagenome172N

Sequences

Protein IDFamilyRBSSequence
Ga0226832_100109052F000747N/AMKKLLILLLLLPLAASARMFPTEFPIKAVCWDSVEEAIEYHQDILGEYPIGKGWIDRKDEPSFAAIMYNPNKPSWTFLSFHQDEGAVVVCAITGGSQWDIIHPGDEAEKLQL
Ga0226832_100109053F000929GGAGMSNGNQLTKSLSVGHIVATVGLIIGGFTFIYDLRESVAIQSFQLENVEDRLERVVARTDDQFGEIMNHLIRLEEKLDAIVFPTPPYQKPR
Ga0226832_100109054F034956GGAMVYIQMKCTHLQIVKESYVKHLCFTIHLCAVLLLLSLASIVHGLIPWILTGTVSDKVKELNSTLNERWLNPK
Ga0226832_100109055F035335GGTGGMNIDAKFFGIIIFLVSQTAAGIWWAASLSSEVERLAGIQGTSIPSIEKAIEGLDVMGFRVEQLSKELEKINDRNDAIENQHSRLFEALQGNQVQQSTKGYGYD
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