NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0226832_10032609

Scaffold Ga0226832_10032609


Overview

Basic Information
Taxon OID3300021791 Open in IMG/M
Scaffold IDGa0226832_10032609 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1749
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NameDaikoku vent field, Mariana back arc basin
CoordinatesLat. (o)21.3250983Long. (o)144.19162955Alt. (m)Depth (m)409.13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049037Metagenome / Metatranscriptome147N
F049924Metagenome / Metatranscriptome146N
F060975Metagenome / Metatranscriptome132N
F097503Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0226832_100326091F097503AGGAGMVGHTRTNMDCTTEAVVLFEDIVEMFEQRMMEGCIANEFKCTYNIEKGEFIAEIDGKYYVAMTREK
Ga0226832_100326092F060975AGGAGMGKTIRRNPVARNSEKFNKPKTIRDRKKDFYRPDSKRDLEEAIEDLSFDEDNRKDAIIIQYQDDLARSQEDGWPYED
Ga0226832_100326093F049037GGAGMTESPCDTCHNYWLCMEGSRACSDFKLFYDTGKITHHDRSPNWYIDMPPHTITVRELSERCGFGKETNKLKHWLGLRTFPLIEDPLGFYFIRHIDGAIENTYTGKSSKRLRNAQAACREVVLEAKVRESTARTQNNVGRVVQREMGRNLARVCEQEDPGEN
Ga0226832_100326094F049924GAGMRKYATQKLIAKDVPVHLKHLFEGQNLRFRGRGSRVKAVETVLKSKKLREKYLWEGWKEMPLPKVMKGLTYRFNQDLPLEFADRMSVYCR
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