NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0226832_10081850

Scaffold Ga0226832_10081850


Overview

Basic Information
Taxon OID3300021791 Open in IMG/M
Scaffold IDGa0226832_10081850 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1156
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NameDaikoku vent field, Mariana back arc basin
CoordinatesLat. (o)21.3250983Long. (o)144.19162955Alt. (m)Depth (m)409.13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004550Metagenome / Metatranscriptome433Y
F041255Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0226832_100818501F041255AGGAGMGNVTSVKSKFFEPQGVDDDKVSASGSATTLVIADGGPYGNL
Ga0226832_100818502F004550AGGAGGMTTHFSSGVTNVPGKGQATSLFSGIKQPLITGGDSQEVAYQNDFVIYNASDWDVTSSGSAFQVAEYAGGWLRIGDNAPAHTETIGVSSKEVWQYNSAKKWYYETRIAMTDVSDYNFFVGFADNAFVDPATVPTDCIGFSHLEATTSIQFLSRKNSAGVSFDMLDSAGGSTYAMADSTIPTQDATTFAMPTNSVTLGFLFQPAGTELSQTADHYKLFLDGNCVGTQAATTVPDDIALELKVFVESSGTNANHLATDYIQTVQQR
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