Scaffold Ga0226832_10130924

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0226832_10130924

Scaffold Ga0226832_10130924

Overview

Basic Information
Taxon OID	3300021791 Open in IMG/M
Scaffold ID	Ga0226832_10130924 Open in IMG/M
Source Dataset Name	Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Marine Biological Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	940
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location Name	Daikoku vent field, Mariana back arc basin
Coordinates	Lat. (^o)	21.3250983	Long. (^o)	144.19162955	Alt. (m)		Depth (m)	409.13
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F099441	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0226832_101309241	F099441	N/A	MWDDVLPLIRTSLRYAEGELEPEDLVVHLDTGQMNLWVAMDNGEVIAAMITEIITYPRKRILRVITLASKDGHGMDNWYDFLPMVEGFAINNGCSALEAWTRKGMARKLKDWKHSYSVITKDLKQRMQ

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