NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0226836_10045766

Scaffold Ga0226836_10045766


Overview

Basic Information
Taxon OID3300021792 Open in IMG/M
Scaffold IDGa0226836_10045766 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Illium_FS922 150_kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2323
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NameIllium vent field, Mariana back arc basin
CoordinatesLat. (o)18.21359Long. (o)144.70748Alt. (m)Depth (m)3582.53
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F002715Metagenome / Metatranscriptome535Y
F002745Metagenome533Y

Sequences

Protein IDFamilyRBSSequence
Ga0226836_100457662F002715AGGMPEEELQSVKLEVGLLKNEVEVRGRQIDTLLSKLDLTTDKLQELTVEIRTLNTRQEDYLRTNTSMSNEFKILHTRIGDVQDKLSSNNRRIEERLDHLDQYKSKLMGMIIVVGGVVGTIVATAISIFLKE
Ga0226836_100457663F000245AGGAGMKTFKQFDEVYSFNASDKKMDAFVVKEIKKRKLATFPVNATDDYTIKKGKPAFKFPSPSGSMMIHVWLRKMLPSKGQPKGMMAFNYQLEDK
Ga0226836_100457664F002745GAGMKSFKGYLTEFAIQSTSDYVFNAGSDSSALKIPISGPMFKRIWPDTIRTTVFHATDLKGLANLKKLEGGKKSISAFFSMMSRYMETGVATEGGGIVAEMDADVLVSARDDIMSEVDKQGRRWVMMSWFEYQTRERSKFSKVEKDLNTLIANLVKKHIPKDKEIQQTKHFGKDAGAVFEIWGNMKKHLKGDGRKIAAVIKDYFDGVEKIIKKNKEVMGDIFYGYTKSKRMTDNSWDEQIVNNIDIYKIHVIKPHPSSDVWGPDEIKQHITDVHKWPMKVWDVAIDLEIYTREVVNAEIRTMGGWSRKK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.