NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0226836_10577245

Scaffold Ga0226836_10577245


Overview

Basic Information
Taxon OID3300021792 Open in IMG/M
Scaffold IDGa0226836_10577245 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Illium_FS922 150_kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)644
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NameIllium vent field, Mariana back arc basin
CoordinatesLat. (o)18.21359Long. (o)144.70748Alt. (m)Depth (m)3582.53
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035337Metagenome172N
F047117Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0226836_105772451F047117N/ATASFHMKHGLYKKPEFKFFHSLGIFNFFQGFKNDDLDLGVYHLYWDRDAENTMEYYDPKTGERTNNIKGDWRERWYDPGEEIKPVEMDNPYRPDPAKMAKWWMMTHTNIQAKIMLKQKEKAETEDEENRPWHHIPKPQWEN
Ga0226836_105772452F035337AGGAGMEYNLPVEITWNEEDQATIDIICDACEKRYIILTNDISNLELCSFCGHYLEVSTEDIHEYQEDS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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