Scaffold Ga0210297_1059408

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0210297_1059408

Scaffold Ga0210297_1059408

Overview

Basic Information
Taxon OID	3300021845 Open in IMG/M
Scaffold ID	Ga0210297_1059408 Open in IMG/M
Source Dataset Name	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R876 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	589
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	46.217	Long. (^o)	-123.781	Alt. (m)		Depth (m)	11
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F099352	Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210297_10594081	F099352	N/A	CLHLQRVRVIVGALATMVFSNGSEAFKGVGAPSLQSEVSVSSNTNRVVLDSQELNAASTAFNLCCAEAYARFTELKRLKVHPGNMTAERDAVESCSAGVYNGIQSSCVAQFEAVKSCLSDNPDEWAKCAAVRRELDVCSVKNKLGELKRL

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