Scaffold Ga0063112_103143

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0063112_103143

Scaffold Ga0063112_103143

Overview

Basic Information
Taxon OID	3300021862 Open in IMG/M
Scaffold ID	Ga0063112_103143 Open in IMG/M
Source Dataset Name	Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-4 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1731
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	26.04908	Long. (^o)	-17.4582	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F058168	Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063112_1031431	F058168	N/A	KRHAEDDVNPMTDVVERVNDIYSAVVQSEECMERIACEIGGLAADVGLTQSPAVKLAGGFLPSKYKNYYKQFQSGKDCQKIKCGTFA

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