NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063123_1005579

Scaffold Ga0063123_1005579


Overview

Basic Information
Taxon OID3300021877 Open in IMG/M
Scaffold IDGa0063123_1005579 Open in IMG/M
Source Dataset NameMetatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-17 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1105
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-20.9869Long. (o)5.9971Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030658Metatranscriptome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0063123_10055791F030658N/AVVQTNRKTPQMTRINRSRAVVHGAGKRQFGASTKRTAAMFNFARSTSQYKWVWQNPQWQFGFRPLIQEFWNERPPDVPFTWTHLDIDTDVGSFSEDTFPPGLPGETLEEYCRRVPNVWSPDSKESDTVDCAVNFALEFAQDVLLEDHKFTERPMLKIVPSDSDYRLEQDWLDLEERGIRQPPLVNGKPLYPVFTKEEIQQVITILEEAHLRTGSVYWYKSKNWPDFWQEITGMDHVPEGEFYAKLQAVFYPEENNFELPDELRTPDELATAPSGKIAPQNRFADKHNELLREEEDFKYQMDYDLFKQYRQRMEFHLDKSEGFGETKWRRPDGVKPLVHDHN
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