NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063121_1016871

Scaffold Ga0063121_1016871


Overview

Basic Information
Taxon OID3300021878 Open in IMG/M
Scaffold IDGa0063121_1016871 Open in IMG/M
Source Dataset NameMetatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-14 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1602
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-13.1054Long. (o)-0.32Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005303Metagenome / Metatranscriptome405Y

Sequences

Protein IDFamilyRBSSequence
Ga0063121_10168711F005303AGGVLLLPLQVLLVEGVDTINHGLDQLDLGVSQTMLVGNVISVSSLSARFAAGSTGLNVKLFAPSLEFVHTLLGPAGEINVDGSPHASSQVGGAGVDVAELLRDLEVLARLSLDGILHSLDASGQPLEDALDVTALLHGDDTELILLVDPDQEGLGGVVEDATALGPVALHTGHLQVGVAGHEQEVVVDELLADLLVHAGQGVVVASQIAGELGEGSLHQVLNTNTLFLGDSGGQAESLDGASNTDPDGVDWDLGGDVALDAFDVHVGDVLEVSGESVVLADQGIEDIGEVEVGVLISGVDAAVLVVELDGASNGLAQGEAGSLGDDATKLGPLLSGHVLGHQGVLGLDVGEFWCGHFCLFVCVLRTDFPAQ
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