NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0063135_1007616

Scaffold Ga0063135_1007616


Overview

Basic Information
Taxon OID3300021908 Open in IMG/M
Scaffold IDGa0063135_1007616 Open in IMG/M
Source Dataset NameMetatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S11 C1 B13 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1057
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)40.529594Long. (o)-13.190131Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000061Metagenome / Metatranscriptome2899Y
F025907Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0063135_10076161F025907N/AHRGWRAGLIVGAAGMAAMVAVVGTARWGMSSNLSGLQSKEERVQMVPSFPDCSKPGENCISTGCCQVSGHKCFTKGQGQAQCNKTCTAGEKGFTCGVINPHSVPVATPLGQSLYCFSVYTEYRQ
Ga0063135_10076162F000061AGGLVNHELELLNIVAAQGKGIFACEQWDVFSDVAVPIDNGYVTIKVEDKFQEFHQLKRKESGTWVNWGLFYQVWVKIREVGKWQAADYTIKIDADAVFVPQRLRTWLSSKPGDSPHGLYYENCPNVQYGFFGHLEIITKTAVEVLTKYLEECHEKFAPCANDGCDWKFGAWGEDVFAQRCMDHHYVDKVEAFDVATDGACAADRPMGQEKNKKWYPEDCSGLETATAH
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.