Scaffold Ga0063134_1021442

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0063134_1021442

Scaffold Ga0063134_1021442

Overview

Basic Information
Taxon OID	3300021928 Open in IMG/M
Scaffold ID	Ga0063134_1021442 Open in IMG/M
Source Dataset Name	Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S9 C1 B7 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3495
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Atlantic Ocean
Coordinates	Lat. (^o)	38.420489	Long. (^o)	-13.575978	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F085090	Metatranscriptome	111	N
F094857	Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063134_10214424	F094857	AGGGGG	VEKLDQEECLEIWGHLVDLENLECLVKLADRALLERPGCPVKRAQMDQEDPQAKEDHRELKACQAWKAVRDPLVLMDQMDRLDHLDLMGLLGIEEFLVYQALLVQLEPQANKDHKEKGEILASQESKALRDHLGLLVLPGLLESEVSGVRRVHQESRELQGWAVDLATRVHLVQRE
Ga0063134_10214425	F085090	AGGAG	VCQDLLGWLASLDQLASLDHLVYRAALERLDHRDNLEPRATAVSLAFRVFLDPLDLKDRRDLQAKMERTESQVQWAGAVLQGLMDPLVVWATLVPQDQEDHQARKAREVHLASSVLLGLLALQARAMEWTWLP

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