Scaffold Ga0063139_1066157

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0063139_1066157

Scaffold Ga0063139_1066157

Overview

Basic Information
Taxon OID	3300021934 Open in IMG/M
Scaffold ID	Ga0063139_1066157 Open in IMG/M
Source Dataset Name	Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S18 C1 B14 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	621
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Atlantic Ocean
Coordinates	Lat. (^o)	47.570082	Long. (^o)	-12.110403	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F036718	Metatranscriptome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063139_10661571	F036718	N/A	LRTPTMSFWSENYSFIKDVYDTRVCKMVEWMDHVEMAIQKVMATKVYTSAEFKRERDNFLSLIKNMEKTDTKKWLDEVKETLFRDRAGDERKDEYTRLEAVIEKHQGLIPRVMETQVKSEVFWKCYEYGDDLIQIFEFIDDQRAKSVRDVIIGDTEATEELIDKHASIMRIMENKKKTVEEFIVKGEKLMEDPKSPKFLETHVSKLK

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