Scaffold Ga0063138_1000959

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0063138_1000959

Scaffold Ga0063138_1000959

Overview

Basic Information
Taxon OID	3300021935 Open in IMG/M
Scaffold ID	Ga0063138_1000959 Open in IMG/M
Source Dataset Name	Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S17 C1 B21 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5356
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Atlantic Ocean
Coordinates	Lat. (^o)	45.529783	Long. (^o)	-12.430106	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F085090	Metatranscriptome	111	N
F094857	Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063138_10009596	F094857	AGG	MDQEDPQAKEDHRELKACQAWKAVRDPLVLMDQMDRLDHLDLMGLLGIEEFLVYQALLVQLEPQANKDHKEKGEILASQESKALRDHLGLLVLPGLLESEVSGVRRVHQESRELQGWAVDLATRVHLVQRE
Ga0063138_10009597	F085090	GGAG	VHLDFLDLQARLDHRDLLEREESVVCQDLLGWLASLDQLASLDHLVYRAALERLDHRDNLEPRATAVSLAFRVFLDPLDLKDRRDLQAKMERTESQVQWAGAVLQGLMDPLVVWATLVPQDQEDHQARKAREVHLASLVLLGLLALQARAMEWTWLP

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