NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213921_1000079

Scaffold Ga0213921_1000079


Overview

Basic Information
Taxon OID3300021952 Open in IMG/M
Scaffold IDGa0213921_1000079 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37191
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (81.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004448Metagenome / Metatranscriptome437Y
F006740Metagenome365Y
F007742Metagenome345Y
F008813Metagenome327Y

Sequences

Protein IDFamilyRBSSequence
Ga0213921_100007929F008813N/AMSYFGIPIRNGVSIGIGSIISFLSGYADATVQGNLLTEIGDNLVQEDGGLILLE
Ga0213921_100007943F007742GGAGMTYYTTKAAAQALADTLAMQDADAWRYEVQAGPRGFYVAVFDFDNYFLGNL
Ga0213921_10000795F004448GGAMTNREIFINFMRDMLRPRTLAEIINKELREAYLSKMQAEQSLEYANSIVEYNRQRIRRLEERLKELGDNDA
Ga0213921_100007957F006740AGGAGMPTFETWSHENLAKFAVEAYVKLQEQQDYIQQLQNDLQDALNAYRRLNK
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