NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213921_1001101

Scaffold Ga0213921_1001101


Overview

Basic Information
Taxon OID3300021952 Open in IMG/M
Scaffold IDGa0213921_1001101 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7483
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062760Metagenome130N
F063689Metagenome129Y
F066774Metagenome / Metatranscriptome126Y
F104778Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0213921_100110111F104778AGGTGGMETKAWLIEEFNKNGELVWKMISFFEPDSIQWMKDIRGKSHNLVISELGVKNSKTINNIEKKYDSSKFVVGL
Ga0213921_100110113F063689GAGMEVLFRYLVFDDLGEPIRRFRTKHEAECFILHKPNHKIERLPAPPKENVFDLITDEPPF
Ga0213921_100110117F062760AGGMKQRDWIVTLQNLPEIQIYLEGLIKDGKTPQVTIKEKARGRSIEANKFLWGRLYKSISNFTGYLPMEVHLLCGHLFLSEQKTINGVQVPYVRSTTDLTVEQFSLYIQQIESYFSQLGWSIDE
Ga0213921_10011018F066774AGGAMIQNTTMGNLETWVRQLNGELNVQEVARTKPEPLPDVVAPYSVFLRAYDKVGLCAATNKRRWAKCNVEFIFDANTRKLKEVKMINQDEE
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