NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213921_1001374

Scaffold Ga0213921_1001374


Overview

Basic Information
Taxon OID3300021952 Open in IMG/M
Scaffold IDGa0213921_1001374 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6349
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004112Metagenome / Metatranscriptome452Y
F010155Metagenome / Metatranscriptome307Y

Sequences

Protein IDFamilyRBSSequence
Ga0213921_10013743F004112N/AMMLRPREFYETSPRHLSLMMRGYEEKKVDSYRQTRLLMFTLVRLLGDPKTAPKSPEGLWQLPGDEVNNGMSDDELRDIFKRLAK
Ga0213921_10013746F010155N/AMIDCANSVRTLYISELNGNLSYNSVNVPVYGQSPFNTPPKNYVIISDISETANNTNHNFQNQVNVTIDIYSEQYRTNDLSIVDNIASQILNLLIPDTNVNGISDASFVVYPMSRTASRYLPLQSGDNFIARKIITISNLVNQK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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