NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213921_1002889

Scaffold Ga0213921_1002889


Overview

Basic Information
Taxon OID3300021952 Open in IMG/M
Scaffold IDGa0213921_1002889 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3838
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036603Metagenome169N
F042864Metagenome157Y
F042894Metagenome157N

Sequences

Protein IDFamilyRBSSequence
Ga0213921_100288910F036603N/AMAKAKSQQSGSEANLLWATMALVACAGLAAVAVAFITDYILSSFQDSQTMALIITDAGTKSDDAKLEGQLTTATQGLKACRDLGWALAVGCLGVGVAVFLRFRRQNAS
Ga0213921_10028896F042894GGAMPDPMSHIPDMLASPSHVIRGLSYQIAYARDRVLQGDWTDKFARERIQLCAAVAEDNLRLSHGCKAVTIYANLTTGCRALLTWSYVDRNGEKDAGSVHPSIDGR
Ga0213921_10028897F042864N/AMNPTKPKATLVTDKAMVDLLTRRVAHFRETAKLKDTDGYIRGLGSYALYGISHSAGQIVVLASEPTSADFNQYVTAKAKADVCARYDHVVEYRDIGPAKKPKVTILCWELA
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