NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063755_1140426

Scaffold Ga0063755_1140426


Overview

Basic Information
Taxon OID3300021954 Open in IMG/M
Scaffold IDGa0063755_1140426 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from the Norwegian Sea - 10m ARK-5M Euk ARK-5-1 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1302
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium catenella(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameNorwegian Sea, Atlantic Ocean
CoordinatesLat. (o)71.2008Long. (o)8.8666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004859Metagenome / Metatranscriptome420Y
F010594Metagenome / Metatranscriptome301Y

Sequences

Protein IDFamilyRBSSequence
Ga0063755_11404261F010594N/AEKRKETLDEVNADHKALSDATGMRMKENKEFQASETDYLEAIDASKNAIVVLGKHNSLAQLRTVAHRLLDARVSQIVDNSRAVSKAKVEVLRSFLHNAESASSFLAIPGMQSYAPQSGQIFGILGQMKEDFEVNLSEAQKGEAKAKAEFESLKAAKEDELATGRKLIVSIDASIAETQENYAQEAKQLEDTQEQLAMDTEFLKNLKSKCATMVC
Ga0063755_11404262F004859GAGVGDTIKILNSDESFEAFDKQEAPVFLQTDATQKERRQQAVSALQRAARLSGSPQISLIAASAQLDAFTKVKALIDKMVAELATQQKDEVAKRDWCIDELNSNKRATTAAYDKKDSLQQQMADLTKKIELLTKDIDSSKAAVKEMMNQMKRASETREAENADFQTTVSDHRIMSMILTKALDRMKQVYALLQQQKPGAPHTQTSA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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