NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0213922_1000331

Scaffold Ga0213922_1000331


Overview

Basic Information
Taxon OID3300021956 Open in IMG/M
Scaffold IDGa0213922_1000331 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26186
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9263Long. (o)-83.4268Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001094Metagenome / Metatranscriptome780Y
F001531Metagenome / Metatranscriptome676Y
F003658Metagenome474Y

Sequences

Protein IDFamilyRBSSequence
Ga0213922_100033117F001531GGCGGMEVSPLDWNRIEPWDYIVIGVASEYHKKYDMVELDDIKQSLYQWFLEHPTKLDTWEAIGERDAKNLIYRSLRNQALDYCQRWKAKSIGYEVSDNYYYDPEMVEAILPSVLRGEIGLTAKVSQGEGKSNAAPSEGGNLTVLMLEIDYGYWKLNKEDRKILFLRYAESMTYDEVAKELELGSEDAARMRTGRAIRRLIFKIGGYRPYKDDDAPAQESETEAPSEVY
Ga0213922_100033121F003658GAGGMFDLTGEPTLACICGCKMFQITVMWDSDRTVGWYDLQQKCKDCGSISTAPTPIDEGV
Ga0213922_10003314F001094GGAMEQVMTKTKVEAVVGSYLRGALTAVLALYLAGETNIKTLATAAVAAVAAPLFKALDPSAKEFGKGSKPVA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.