NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213922_1000584

Scaffold Ga0213922_1000584


Overview

Basic Information
Taxon OID3300021956 Open in IMG/M
Scaffold IDGa0213922_1000584 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16378
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (19.15%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9263Long. (o)-83.4268Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033036Metagenome178N
F035766Metagenome171Y
F050317Metagenome145N
F050325Metagenome145Y
F072276Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0213922_100058416F033036N/AMNYEIEDIQGLMNDLSTIGQGKKCLVYKKHYGFGEDLKGVNDGVTPLYITKEGADLMHEAKFGRRIKETTLAIIWSNWEKVPGRSWTETPLPAADLVESGLYRVGLFQSSPRMHFPGELPPERVKMAYEILMDQILKVRFDEE
Ga0213922_100058427F072276N/AMSKTLIETSTRKRFATKFMVLENHRPTEESVVVFKDSEDSPNFLVIRYERDAEGKMFQRGTLEEVNEEQFKREHAPHANWDNTTLREYDQKFQDWRSSSLMQKLEQVGEDEV
Ga0213922_10005844F050325GAGGVLPRWGRNHLQESPSLPFIIMQLDMVIRIGKYKGKTVKWVMYNDRRYFEWAKVNAPSMFEPFKPQTKPRVSDTNTEGKPTYVEPPEESDETRDSWTNPSIFFQIGQQMLRERGDL
Ga0213922_100058443F050317N/AMQEEKYYIVAAGGYLPKPVVEEIIIKESEMIESEDDFADFEDYKTYILEEAAAEFDQRFAKSIILTEAQAKEISVYLTK
Ga0213922_100058445F035766N/AMTTQKFKVLGVEQGITITRPFNSEMYAHNDKVREMQNDAIIAALESLKDSEDEELIEKAAKACSGYGYGDGYEYNDMIDDAIKNVETSNNSWMREEIWPDFLRFGLVQPLDTDYVGYKKL
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