NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213922_1002268

Scaffold Ga0213922_1002268


Overview

Basic Information
Taxon OID3300021956 Open in IMG/M
Scaffold IDGa0213922_1002268 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6654
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9263Long. (o)-83.4268Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006546Metagenome / Metatranscriptome370Y
F009204Metagenome321Y
F010915Metagenome / Metatranscriptome297Y
F037694Metagenome / Metatranscriptome167N

Sequences

Protein IDFamilyRBSSequence
Ga0213922_100226811F009204N/AMKTTIKYYAKDIYGVRREKFICKKQEDVFYRLTGRRTLDSVSRELIRDLSGSGIEFEQVLPPE
Ga0213922_10022686F006546N/AMKWKYIGNRAGDATKGQQYIVEICEDTENYAQKDMPQFIHAVVVQPPSPRNNTFFSMRAGDTIKICNPYYEMMKYSHPGFVPVKE
Ga0213922_10022687F037694N/AMLNKEQAFLVNEFIRKNATRNLWEVSDKLYTLLSEIKKIEELPQNNETQIAAA
Ga0213922_10022688F010915AGAAGMKHKLPPHNMVVVNKVGLDLYNISYVKYVDHDVIQLIKHNLSAEDVAQLLGNI
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