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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021956 Open in IMG/M |
| Scaffold ID | Ga0213922_1003638 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4925 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (33.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 33.9263 | Long. (o) | -83.4268 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000922 | Metagenome | 833 | Y |
| F028148 | Metagenome | 192 | Y |
| F103133 | Metagenome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0213922_100363810 | F103133 | N/A | MPEPIEFNPMRYKIQLSTSTGGWSDLRESSDDGRTYETCLFPTRNAAIAAREEFSELSEFLETTRIVTAETPETENIYA |
| Ga0213922_10036382 | F000922 | GAG | MRILTLKWHTRCSGVADNDHNPLWCFCLDTWHTLWNKVNVNKEQWEQAKSLYLAGMEWKAIANELQLSQATLQTRASREGITKLKAQMQTVCKENKAQSLEALSAIVRNKLAEDAAATIERVNGYNLEGIRDENTREQILGSVAKRSALVFGWSEAGEQASVSINLLGSMPDRVSEIQVTNESETK |
| Ga0213922_10036389 | F028148 | N/A | MQVCCERVGQSIRNQSIKNMKTIHQVIREIQCFDPAIRPFDPHYLPQSVRAYLHNKYSMDARLTDEEQQLVETSFEPFADNLREVFQDDPRPDATRFYLFDDLSLYVKTNAGPELWSDAQVFVVERILPCMRLTRLEADLMREIGMDDQVNEVRDDFYSAFAHVLHRDCGIPHCDARNHWNAFSRQLSDSACESIVLGGSESGRAEGLRFASEYAPVNA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |